PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00038.1.g03180.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 432aa    MW: 46591.8 Da    PI: 4.4884
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00038.1.g03180.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.96.1e-1999148255
                           AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   ++ GVr+++ +grWvAeI+d      ++ r++lg+f+taeeAa+a+++a+  l+g
  Zjn_sc00038.1.g03180.1.am.mk  99 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 148
                                   789******.7*********33....35**********************99998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.4E-1999156IPR016177DNA-binding domain
SMARTSM003804.0E-3599162IPR001471AP2/ERF domain
PROSITE profilePS5103219.55999156IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-2799155IPR001471AP2/ERF domain
PfamPF008471.1E-1399148IPR001471AP2/ERF domain
CDDcd000188.58E-30100155No hitNo description
PRINTSPR003676.6E-8100111IPR001471AP2/ERF domain
PRINTSPR003676.6E-8122138IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MHNVSVKRPH LPLTSLIYVV DLPQYPLPPR QAELDRDSSM ARKRKAFDAL GDIDGGEDAL  60
NPPPSLVSTM DACTWSSGGS MVAAVAVAAR QQQQRGRKRF VGVRQRPSGR WVAEIKDTIQ  120
KIRVWLGTFD TAEEAARAYD EAACLLRGAN TRTNFWPRPS QAVAAHPVAP PAHVPTTPAL  180
PPKVTNLLLL RLRARNQQLL NATAAQQEAA MLPRGQSCHE AYGGDGEECG FQVDDYLSHD  240
CGSDGTGSSQ EMEDEEAEEE EEELDFQFMD AHVASPAATG IECSPFEVVA AELGSSVVDA  300
EDGEPATAVQ ELIRRIDYER KVSASLYALN GVSECLKMRL GSTSAGAAMR DQLSGLREAC  360
RKKQHEAVPA QQQHQEQEPA AETAVDREAG QEAYSGSDGG GDMEVVRASP SEASGVEDGD  420
VLWSSLDLAP IC
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0671091e-95BT067109.1 Zea mays full-length cDNA clone ZM_BFb0192O05 mRNA, complete cds.
GenBankJX4699201e-95JX469920.1 Zea mays subsp. mays clone UT3176 AP2-EREBP-type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001169522.11e-122putative AP2/EREBP transcription factor superfamily protein
TrEMBLC0PFP01e-121C0PFP0_MAIZE; Uncharacterized protein
TrEMBLK4JRN01e-121K4JRN0_MAIZE; AP2-EREBP-type transcription factor (Fragment)
STRINGGRMZM2G039112_P011e-121(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54823052
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.14e-16related to AP2 11